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Supplementary material The Supplementary Material for this article can be found online at: Glossary ABA abscisic acid ABI3VP1 ABSCISIC ACID INSENSITIVE 3 VIVIPAROUS 1 ABF ABSCISIC ACID RESPONSIVE ELEMENT-BINDING FACTOR ACC 1-aminocyclopropane-1-carboxylic oxidase ALA 5-aminolevulinic acid AOS allene oxide synthase AOX alternative oxidase AP APETALA APX ascorbate peroxidase ARF auxin response factor ARID AT-rich interactive domain ASC L-ascorbic acid AUX auxin receptor BBR-BPC Barley B Recombinant/Basic PentaCysteine BIM BES1-INTERACTING MYC-LIKE bHLH basic helixloophelix BLS bacterial leaf streak BPM BTB/POZ and MATH domain-containing protein BT BTB and TAZ domain protein bHLH basic helix-loop-helix bZIP basic (region) leucine zipper CaLCuV cabbage leaf curl virus CAM crassulacean acid metabolism CaMV cauliflower mosaic virus CAT catalase CBP calmodulin-binding protein CDP CAAT displacement protein (transcriptional repressor) CGMMV cucumber green mottle mosaic virus C2H zinc finger protein C3H zinc finger CCCH domain-containing protein C4H 4-cinnamate hydroxylase CHI chalcone isomerase CHS chalcone synthase 4CL 4-coumarate: CoA ligase Clp caseinolytic protease CLP chaperonin-like protein CMV cucumber mosaic virus CRISPR/Cas clustered regularly interspaced short palindromic repeats/CRISPR-associated CRK cysteine-rich receptor-like kinase CXIP CAX-interacting protein CymRSV Cymbidium ringspot virus DEGs differentially-expressed genes DIMI DIMINUTO Dof DNA-binding with one finger EIL ethylene insensitive-like ER endoplasmic reticulum EREBP ethylene-responsive element binding protein ERF ethylene response factor ETI effector-triggered immunity FLS flavonol synthase FRS FAR1-RELATED SEQUENCE FT FLOWERING LOCUS T G2-like GOLDEN2-LIKE GABA -aminobutyric acid GARP GOLDEN2, ARR-B and Psr1 superfamily GFLV grapevine fanleaf virus GH3 Gretchen Hagen3 GID GA-INSENSITIVE DWARF GRAS GIBBERELLIC-ACID INSENSITIVE, REPRESSOR of GAI and SCARECROW GRF growth regulating factor GSTU glutathione S-transferase belonging to the tau class HAB HYPERSENSITIVE TO ABSCISIC ACID HAP CCAAT-box binding protein HD homeodomain HLH helix-loop-helix HR hypersensitive response HSF heat shock factor HSP heat shock protein JA jasmonic acid LEA late-embryogenesis abundant LHC light-harvesting complex LIM homeobox transcription factor LOX lipoxygenase MADS MINICHROMOSOME MAINTENANCE 1/AGAMOUS/DEFICIENS/SERUM RESPONSE FACTOR MAPK mitogen-associated protein kinase MDHAR monodehydroascorbate reductase MIOX myo -inositol oxygenase MYB myeloblastosis NAC no apical meristem/ATAF1/cup-shaped cotyledon NF-Y nuclear factor Y NIN nodule inception OXPHOS oxidative phosphorylation PAL phenylalanine ammonia-lyase PAMP pathogen-associated molecular pattern PCD programmed cell death PcG Polycomb group PDH proline dehydrogenase PEPC phosphoenolpyruvate carboxylase PepMV pepino mosaic virus PLATZ plant AT-rich sequence and zinc-binding protein POD peroxidase PR pathogen-related PS photosystem PTI PAMP-triggered immunity RGA resistance gene analogue RLK receptor-like kinase ROS reactive oxidative species RR response regulator RSV rice stripe virus RWP-RK transcription factor with RWPxRK motif SA salicylic acid SBP SQUAMOSA-PROMOTER BINDING PROTEIN SOD superoxide dismutase SMRT single-molecule real-time SRBSDV Southern rice blackstreaked dwarf virus STS stilbene synthase TCP bHLH DNA-binding domain TEV tobacco etch potyvirus TF transcription factor TMV tobacco mosaic virus TUB Tubby family of bipartite transcription factors TuYV turnip yellows virus TYLCV tomato yellow leaf curl virus UFGT UDP-glucose:flavonoid 3-O-glucosyltransferase USP universal stress protein WAKL wall-associated receptor kinase-like WAKS wall-associated kinases WRKY transcription factor family WT wild type WUS WUSCHEL ZIM zinc-finger inflorescence meristem ZIP leucine zipper References 1 AhmadM

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